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1 Dense sampling of bird diversity increases power of comparative genomics (vol 587, pg 252, 2020)
Feng SH, Stiller J, Deng Y, Armstrong J, Fang Q, Reeve AH, Xie D, Chen GJ, Guo CX, Faircloth BC, Petersen B, Wang ZJ, Zhou Q, Diekhans M, Chen WJ, Andreu-Sanchez S, Margaryan A, Howard JT, Parent C, Pacheco G, Sinding MHS, Puetz L, Cavill E, Ribeiro AM, Eckhart L, Fjeldsa J, Hosner PA, Brumfield RT, Christidis L, Bertelsen MF, Sicheritz-Ponten T, Tietze DT, Robertson BC, Song G, Borgia G, Claramunt S, Lovette IJ, Cowen SJ, Njoroge P, Dumbacher JP, Ryder OA, Fuchs J, Bunce M, Burt DW, Cracraft J, Meng GL, Hackett SJ, Ryan PG, Jonsson KA, Jamieson IG, da Fonseca RR, Braun EL, Houde P, Mirarab S, Suh A, Hansson B, Ponnikas S, Sigeman H, Stervander M, Frandsen PB, van der Zwan H, van der Sluis R, Visser C, Balakrishnan CN, Clark AG, Fitzpatrick JW, Bowman R, Chen N, Cloutier A, Sackton TB, Edwards SV, Foote DJ, Shakya SB, Sheldon FH, Vignal A, Soares AER, Shapiro B, Gonzalez-Solis J, Ferrer-Obiol J, Rozas J, Riutort M, Tigano A, Friesen V, Dalen L, Urrutia AO, Szekely T, Liu Y, Campana MG, Corvelo A, Fleischer RC, Rutherford KM, Gemmell NJ, Dussex N, Mouritsen H, Thiele N, Delmore K, Liedvogel M, Franke A, Hoeppner MP, Krone O, Fudickar AM, Mila B, Ketterson ED, Fidler AE, Friis G, Parody-Merino AM, Battley PF, Cox MP, Lima NCB, Prosdocimi F, Parchman TL, Schlinger BA, Loiselle BA, Blake JG, Lim HC, Day LB, Fuxjager MJ, Baldwin MW, Braun MJ, Wirthlin M, Dikow RB, Ryder TB, Camenisch G, Keller LF, DaCosta JM, Hauber ME, Louder MIM, Witt CC, McGuire JA, Mudge J, Megna LC, Carling MD, Wang B, Taylor SA, Del-Rio G, Aleixo A, Vasconcelos ATR, Mello CV, Weir JT, Haussler D, Li QY, Yang HM, Wang J, Lei FM, Rahbek C, Gilbert MTP, Graves GR, Jarvis ED, Paten B, Zhang GJ
Nature, 592(7856), E24, 2021
2 Dense sampling of bird diversity increases power of comparative genomics
Feng SH, Stiller J, Deng Y, Armstrong J, Fang Q, Reeve AH, Xie D, Chen GJ, Guo CX, Faircloth BC, Petersen B, Wang ZJ, Zhou Q, Diekhans M, Chen WJ, Andreu-Sanchez S, Margaryan A, Howard JT, Parent C, Pacheco G, Sinding MHS, Puetz L, Cavill E, Ribeiro AM, Eckhart L, Fjeldsa J, Hosner PA, Brumfield RT, Christidis L, Bertelsen MF, Sicheritz-Ponten T, Tietze DT, Robertson BC, Song G, Borgia G, Claramunt S, Lovette IJ, Cowen SJ, Njoroge P, Dumbacher JP, Ryder OA, Fuchs JM, Bunce M, Burt DW, Cracraft J, Meng GL, Hackett SJ, Ryan PG, Jonsson KA, Jamieson IG, da Fonseca RR, Braun EL, Houde P, Mirarab S, Suh A, Hansson B, Ponnikas S, Sigeman H, Stervander M, Frandsen PB, van der Zwan H, van der Sluis R, Visser C, Balakrishnan CN, Clark AG, Fitzpatrick JW, Bowman R, Chen N, Cloutier A, Sackton TB, Edwards SV, Foote DJ, Shakya SB, Sheldon FH, Vignal A, Soares AER, Shapiro B, Gonzalez-Solis J, Ferrer-Obiol J, Rozas J, Riutort M, Tigano A, Friesen V, Dalen L, Urrutia AO, Szekely T, Liu Y, Campana MG, Corvelo A, Fleischer RC, Rutherford KM, Gemmell NJ, Dussex N, Mouritsen H, Thiele N, Delmore K, Liedvogel M, Franke A, Hoeppner MP, Krone O, Fudickar AM, Mila B, Ketterson ED, Fidler AE, Friis G, Parody-Merino AM, Battley PF, Cox MP, Lima NCB, Prosdocimi F, Parchman TL, Schlinger BA, Loiselle BA, Blake JG, Lim HC, Day LB, Fuxjager MJ, Baldwin MW, Braun MJ, Wirthlin M, Dikow RB, Ryder TB, Camenisch G, Keller LF, DaCosta JM, Hauber ME, Louder MIM, Witt CC, McGuire JA, Mudge J, Megna LC, Carling MD, Wang B, Taylor SA, Del-Rio G, Aleixo A, Vasconcelos ATR, Mello CV, Weir JT, Haussler D, Li QY, Yang HM, Wang J, Lei FM, Rahbek C, Gilbert MTP, Graves GR, Jarvis ED, Paten B, Zhang GJ
Nature, 587(7833), 252, 2020
3 Dense sampling of bird diversity increases power of comparative genomics
Feng SH, Stiller J, Deng Y, Armstrong J, Fang Q, Reeve AH, Xie D, Chen GJ, Guo CX, Faircloth BC, Petersen B, Wang ZJ, Zhou Q, Diekhans M, Chen WJ, Andreu-Sanchez S, Margaryan A, Howard JT, Parent C, Pacheco G, Sinding MHS, Puetz L, Cavill E, Ribeiro AM, Eckhart L, Fjeldsa J, Hosner PA, Brumfield RT, Christidis L, Bertelsen MF, Sicheritz-Ponten T, Tietze DT, Robertson BC, Song G, Borgia G, Claramunt S, Lovette IJ, Cowen SJ, Njoroge P, Dumbacher JP, Ryder OA, Fuchs JM, Bunce M, Burt DW, Cracraft J, Meng GL, Hackett SJ, Ryan PG, Jonsson KA, Jamieson IG, da Fonseca RR, Braun EL, Houde P, Mirarab S, Suh A, Hansson B, Ponnikas S, Sigeman H, Stervander M, Frandsen PB, van der Zwan H, van der Sluis R, Visser C, Balakrishnan CN, Clark AG, Fitzpatrick JW, Bowman R, Chen N, Cloutier A, Sackton TB, Edwards SV, Foote DJ, Shakya SB, Sheldon FH, Vignal A, Soares AER, Shapiro B, Gonzalez-Solis J, Ferrer-Obiol J, Rozas J, Riutort M, Tigano A, Friesen V, Dalen L, Urrutia AO, Szekely T, Liu Y, Campana MG, Corvelo A, Fleischer RC, Rutherford KM, Gemmell NJ, Dussex N, Mouritsen H, Thiele N, Delmore K, Liedvogel M, Franke A, Hoeppner MP, Krone O, Fudickar AM, Mila B, Ketterson ED, Fidler AE, Friis G, Parody-Merino AM, Battley PF, Cox MP, Lima NCB, Prosdocimi F, Parchman TL, Schlinger BA, Loiselle BA, Blake JG, Lim HC, Day LB, Fuxjager MJ, Baldwin MW, Braun MJ, Wirthlin M, Dikow RB, Ryder TB, Camenisch G, Keller LF, DaCosta JM, Hauber ME, Louder MIM, Witt CC, McGuire JA, Mudge J, Megna LC, Carling MD, Wang B, Taylor SA, Del-Rio G, Aleixo A, Vasconcelos ATR, Mello CV, Weir JT, Haussler D, Li QY, Yang HM, Wang J, Lei FM, Rahbek C, Gilbert MTP, Graves GR, Jarvis ED, Paten B, Zhang GJ
Nature, 587(7833), 252, 2020
4 Reorganization of surviving mammal communities after the end-Pleistocene megafaunal extinction
Toth AB, Lyons SK, Barr WA, Behrensmeyer AK, Blois JL, Bobe R, Davis M, Du A, Eronen JT, Faith JT, Fraser D, Gotelli NJ, Graves GR, Jukar AM, Miller JH, Pineda-Munoz S, Soul LC, Villasenor A, Alroy J
Science, 365(6459), 1305, 2019
5 Holocene shifts in the assembly of plant and animal communities implicate human impacts
Lyons SK, Amatangelo KL, Behrenstneyer AK, Bercovici A, Blois JL, Davis M, DiMichele WA, Du A, Eronen JT, Faith JT, Graves GR, Jud N, Labandeira C, Looy CM, McGill B, Miller JH, Patterson D, Pineda-Munoz S, Potts R, Riddle B, Terry R, Toth A, Ulrich W, Villasenor A, Wing S, Anderson H, Anderson J, Waller D, Gotelli NJ
Nature, 529(7584), 80, 2016
6 How foreign is the past? Reply
Lyons SK, Miller JH, Amatangel KL, Behrensmeyer AK, Bercovici A, Blois JL, Davis M, DiMichele W, Du A, Eronen JT, Faith JT, Graves GR, Jud N, Labandeira C, Looy CV, McGill B, Patterson D, Pineda-Munoz S, Potts R, Riddle B, Terry R, Toth A, Ulrich W, Villasenor A, Wing S, Anderson H, Anderson J, Gotelli NJ
Nature, 538(7626), E3, 2016
7 Specimen collection: An essential tool
Rocha LA, Aleixo A, Allen G, Almeda F, Baldwin CC, Barclay MVL, Bates JM, Bauer AM, Benzoni F, Berns CM, Berumen ML, Blackburn DC, Blum S, Bolanos F, Bowie RCK, Britz R, Brown RM, Cadena CD, Carpenter K, Ceriaco LM, Chakrabarty P, Chaves G, Choat JH, Clements KD, Collette BB, Collins A, Coyne J, Cracraft J, Daniel T, de Carvalho MR, de Queiroz K, Di Dario F, Drewes R, Dumbacher JP, Engilis A, Erdmann MV, Eschmeyer W, Feldman CR, Fisher BL, Fjeldsa J, Fritsch PW, Fuchs J, Getahun A, Gill A, Gomon M, Gosliner T, Graves GR, Griswold CE, Guralnick R, Hartel K, Helgen KM, Ho H, Iskandar DT, Iwamoto T, Jaafar Z, James HF, Johnson D, Kavanaugh D, Knowlton N, Lacey E, Larson HK, Last P, Leis JM, Lessios H, Liebherr J, Lowman M, Mahler DL, Mamonekene V, Matsuura K, Mayer GC, Mays H, McCosker J, McDiarmid RW, McGuire J, Miller MJ, Mooi R, Mooi RD, Moritz C, Myers P, Nachman MW, Nussbaum RA, Foighil DO, Parenti LR, Parham JF, Paul E, Paulay G, Perez-Eman J, Perez-Matus A, Poe S, Pogonoski J, Rabosky DL, Randall JE, Reimer JD, Robertson DR, Rodel MO, Rodrigues MT, Roopnarine P, Ruber L, Ryan MJ, Sheldon F, Shinohara G, Short A, Simison WB, Smith-Vaniz WF, Springer VG, Stiassny M, Tello JG, Thompson CW, Trnski T, Tucker P, Valqui T, Vecchione M, Verheyen E, Wainwright PC, Wheeler TA, White T, Will K, Williams JT, Williams G, Wilson EO, Winker K, Winterbottom R, Witt CC
Science, 344(6186), 814, 2014
8 Comparative genomics reveals insights into avian genome evolution and adaptation
Zhang GJ, Li C, Li QY, Li B, Larkin DM, Lee C, Storz JF, Antunes A, Greenwold MJ, Meredith RW, Odeen A, Cui J, Zhou Q, Xu LH, Pan HL, Wang ZJ, Jin LJ, Zhang P, Hu HF, Yang W, Hu J, Xiao J, Yang ZK, Liu Y, Xie QL, Yu H, Lian JM, Wen P, Zhang F, Li H, Zeng YL, Xiong ZJ, Liu SP, Zhou L, Huang ZY, An N, Wang J, Zheng QM, Xiong YQ, Wang GB, Wang B, Wang JJ, Fan Y, da Fonseca RR, Alfaro-Nunez A, Schubert M, Orlando L, Mourier T, Howard JT, Ganapathy G, Pfenning A, Whitney O, Rivas MV, Hara E, Smith J, Farre M, Narayan J, Slavov G, Romanov MN, Borges R, Machado JP, Khan I, Springer MS, Gatesy J, Hoffmann FG, Opazo JC, Hastad O, Sawyer RH, Kim H, Kim KW, Kim HJ, Cho S, Li N, Huang YH, Bruford MW, Zhan XJ, Dixon A, Bertelsen MF, Derryberry E, Warren W, Wilson RK, Li SB, Ray DA, Green RE, O'Brien SJ, Griffin D, Johnson WE, Haussler D, Ryder OA, Willerslev E, Graves GR, Alstrom P, Fjeldsa J, Mindell DP, Edwards SV, Braun EL, Rahbek C, Burt DW, Houde P, Zhang Y, Yang HM, Wang J, Jarvis ED, Gilbert MTP, Wang J
Science, 346(6215), 1311, 2014
9 Whole-genome analyses resolve early branches in the tree of life of modern birds
Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SYW, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Li JW, Zhang F, Li H, Zhou L, Narula N, Liu L, Ganapathy G, Boussau B, Bayzid MS, Zavidovych V, Subramanian S, Gabaldon T, Capella-Gutierrez S, Huerta-Cepas J, Rekepalli B, Munch K, Schierup M, Lindow B, Warren WC, Ray D, Green RE, Bruford MW, Zhan XJ, Dixon A, Li SB, Li N, Huang YH, Derryberry EP, Bertelsen MF, Sheldon FH, Brumfield RT, Mello CV, Lovell PV, Wirthlin M, Schneider MPC, Prosdocimi F, Samaniego JA, Velazquez AMV, Alfaro-Nunez A, Campos PF, Petersen B, Sicheritz-Ponten T, Pas A, Bailey T, Scofield P, Bunce M, Lambert DM, Zhou Q, Perelman P, Driskell AC, Shapiro B, Xiong ZJ, Zeng YL, Liu SP, Li ZY, Liu BH, Wu K, Xiao J, Yinqi X, Zheng QM, Zhang Y, Yang HM, Wang J, Smeds L, Rheindt FE, Braun M, Fjeldsa J, Orlando L, Barker FK, Jonsson KA, Johnson W, Koepfli KP, O'Brien S, Haussler D, Ryder OA, Rahbek C, Willerslev E, Graves GR, Glenn TC, McCormack J, Burt D, Ellegren H, Alstrom P, Edwards SV, Stamatakis A, Mindell DP, Cracraft J, Braun EL, Warnow T, Jun W, Gilbert MTP, Zhang GJ
Science, 346(6215), 1320, 2014
10 An Update of Wallace's Zoogeographic Regions of the World
Holt B, Lessard JP, Borregaard MK, Fritz SA, Araujo MB, Dimitrov D, Fabre PH, Graham CH, Graves GR, Jonsson KA, Nogues-Bravo D, Wang ZH, Whittaker RJ, Fjeldsa J, Rahbek C
Science, 339(6115), 74, 2013