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No. Article
1 Dense sampling of bird diversity increases power of comparative genomics (vol 587, pg 252, 2020)
Feng SH, Stiller J, Deng Y, Armstrong J, Fang Q, Reeve AH, Xie D, Chen GJ, Guo CX, Faircloth BC, Petersen B, Wang ZJ, Zhou Q, Diekhans M, Chen WJ, Andreu-Sanchez S, Margaryan A, Howard JT, Parent C, Pacheco G, Sinding MHS, Puetz L, Cavill E, Ribeiro AM, Eckhart L, Fjeldsa J, Hosner PA, Brumfield RT, Christidis L, Bertelsen MF, Sicheritz-Ponten T, Tietze DT, Robertson BC, Song G, Borgia G, Claramunt S, Lovette IJ, Cowen SJ, Njoroge P, Dumbacher JP, Ryder OA, Fuchs J, Bunce M, Burt DW, Cracraft J, Meng GL, Hackett SJ, Ryan PG, Jonsson KA, Jamieson IG, da Fonseca RR, Braun EL, Houde P, Mirarab S, Suh A, Hansson B, Ponnikas S, Sigeman H, Stervander M, Frandsen PB, van der Zwan H, van der Sluis R, Visser C, Balakrishnan CN, Clark AG, Fitzpatrick JW, Bowman R, Chen N, Cloutier A, Sackton TB, Edwards SV, Foote DJ, Shakya SB, Sheldon FH, Vignal A, Soares AER, Shapiro B, Gonzalez-Solis J, Ferrer-Obiol J, Rozas J, Riutort M, Tigano A, Friesen V, Dalen L, Urrutia AO, Szekely T, Liu Y, Campana MG, Corvelo A, Fleischer RC, Rutherford KM, Gemmell NJ, Dussex N, Mouritsen H, Thiele N, Delmore K, Liedvogel M, Franke A, Hoeppner MP, Krone O, Fudickar AM, Mila B, Ketterson ED, Fidler AE, Friis G, Parody-Merino AM, Battley PF, Cox MP, Lima NCB, Prosdocimi F, Parchman TL, Schlinger BA, Loiselle BA, Blake JG, Lim HC, Day LB, Fuxjager MJ, Baldwin MW, Braun MJ, Wirthlin M, Dikow RB, Ryder TB, Camenisch G, Keller LF, DaCosta JM, Hauber ME, Louder MIM, Witt CC, McGuire JA, Mudge J, Megna LC, Carling MD, Wang B, Taylor SA, Del-Rio G, Aleixo A, Vasconcelos ATR, Mello CV, Weir JT, Haussler D, Li QY, Yang HM, Wang J, Lei FM, Rahbek C, Gilbert MTP, Graves GR, Jarvis ED, Paten B, Zhang GJ
Nature, 592(7856), E24, 2021
2 Dense sampling of bird diversity increases power of comparative genomics
Feng SH, Stiller J, Deng Y, Armstrong J, Fang Q, Reeve AH, Xie D, Chen GJ, Guo CX, Faircloth BC, Petersen B, Wang ZJ, Zhou Q, Diekhans M, Chen WJ, Andreu-Sanchez S, Margaryan A, Howard JT, Parent C, Pacheco G, Sinding MHS, Puetz L, Cavill E, Ribeiro AM, Eckhart L, Fjeldsa J, Hosner PA, Brumfield RT, Christidis L, Bertelsen MF, Sicheritz-Ponten T, Tietze DT, Robertson BC, Song G, Borgia G, Claramunt S, Lovette IJ, Cowen SJ, Njoroge P, Dumbacher JP, Ryder OA, Fuchs JM, Bunce M, Burt DW, Cracraft J, Meng GL, Hackett SJ, Ryan PG, Jonsson KA, Jamieson IG, da Fonseca RR, Braun EL, Houde P, Mirarab S, Suh A, Hansson B, Ponnikas S, Sigeman H, Stervander M, Frandsen PB, van der Zwan H, van der Sluis R, Visser C, Balakrishnan CN, Clark AG, Fitzpatrick JW, Bowman R, Chen N, Cloutier A, Sackton TB, Edwards SV, Foote DJ, Shakya SB, Sheldon FH, Vignal A, Soares AER, Shapiro B, Gonzalez-Solis J, Ferrer-Obiol J, Rozas J, Riutort M, Tigano A, Friesen V, Dalen L, Urrutia AO, Szekely T, Liu Y, Campana MG, Corvelo A, Fleischer RC, Rutherford KM, Gemmell NJ, Dussex N, Mouritsen H, Thiele N, Delmore K, Liedvogel M, Franke A, Hoeppner MP, Krone O, Fudickar AM, Mila B, Ketterson ED, Fidler AE, Friis G, Parody-Merino AM, Battley PF, Cox MP, Lima NCB, Prosdocimi F, Parchman TL, Schlinger BA, Loiselle BA, Blake JG, Lim HC, Day LB, Fuxjager MJ, Baldwin MW, Braun MJ, Wirthlin M, Dikow RB, Ryder TB, Camenisch G, Keller LF, DaCosta JM, Hauber ME, Louder MIM, Witt CC, McGuire JA, Mudge J, Megna LC, Carling MD, Wang B, Taylor SA, Del-Rio G, Aleixo A, Vasconcelos ATR, Mello CV, Weir JT, Haussler D, Li QY, Yang HM, Wang J, Lei FM, Rahbek C, Gilbert MTP, Graves GR, Jarvis ED, Paten B, Zhang GJ
Nature, 587(7833), 252, 2020
3 Dense sampling of bird diversity increases power of comparative genomics
Feng SH, Stiller J, Deng Y, Armstrong J, Fang Q, Reeve AH, Xie D, Chen GJ, Guo CX, Faircloth BC, Petersen B, Wang ZJ, Zhou Q, Diekhans M, Chen WJ, Andreu-Sanchez S, Margaryan A, Howard JT, Parent C, Pacheco G, Sinding MHS, Puetz L, Cavill E, Ribeiro AM, Eckhart L, Fjeldsa J, Hosner PA, Brumfield RT, Christidis L, Bertelsen MF, Sicheritz-Ponten T, Tietze DT, Robertson BC, Song G, Borgia G, Claramunt S, Lovette IJ, Cowen SJ, Njoroge P, Dumbacher JP, Ryder OA, Fuchs JM, Bunce M, Burt DW, Cracraft J, Meng GL, Hackett SJ, Ryan PG, Jonsson KA, Jamieson IG, da Fonseca RR, Braun EL, Houde P, Mirarab S, Suh A, Hansson B, Ponnikas S, Sigeman H, Stervander M, Frandsen PB, van der Zwan H, van der Sluis R, Visser C, Balakrishnan CN, Clark AG, Fitzpatrick JW, Bowman R, Chen N, Cloutier A, Sackton TB, Edwards SV, Foote DJ, Shakya SB, Sheldon FH, Vignal A, Soares AER, Shapiro B, Gonzalez-Solis J, Ferrer-Obiol J, Rozas J, Riutort M, Tigano A, Friesen V, Dalen L, Urrutia AO, Szekely T, Liu Y, Campana MG, Corvelo A, Fleischer RC, Rutherford KM, Gemmell NJ, Dussex N, Mouritsen H, Thiele N, Delmore K, Liedvogel M, Franke A, Hoeppner MP, Krone O, Fudickar AM, Mila B, Ketterson ED, Fidler AE, Friis G, Parody-Merino AM, Battley PF, Cox MP, Lima NCB, Prosdocimi F, Parchman TL, Schlinger BA, Loiselle BA, Blake JG, Lim HC, Day LB, Fuxjager MJ, Baldwin MW, Braun MJ, Wirthlin M, Dikow RB, Ryder TB, Camenisch G, Keller LF, DaCosta JM, Hauber ME, Louder MIM, Witt CC, McGuire JA, Mudge J, Megna LC, Carling MD, Wang B, Taylor SA, Del-Rio G, Aleixo A, Vasconcelos ATR, Mello CV, Weir JT, Haussler D, Li QY, Yang HM, Wang J, Lei FM, Rahbek C, Gilbert MTP, Graves GR, Jarvis ED, Paten B, Zhang GJ
Nature, 587(7833), 252, 2020
4 One thousand plant transcriptomes and the phylogenomics of green plants
Leebens-Mack JH, Barker MS, Carpenter EJ, Deyholos MK, Gitzendanner MA, Graham SW, Grosse I, Li Z, Melkonian M, Mirarab S, Porsch M, Quint M, Rensing SA, Soltis DE, Soltis PS, Stevenson DW, Ullrich KK, Wickett NJ, DeGironimo L, Edger PP, Jordon-Thaden IE, Joya S, Liu T, Melkonian B, Miles NW, Pokorny L, Quigley C, Thomas P, Villarreal JC, Augustin MM, Barrett MD, Baucom RS, Beerling DJ, Benstein RM, Biffin E, Brockington SF, Burge DO, Burris JN, Burris KP, Burtet-Sarramegna V, Caicedo AL, Cannon SB, Cebi Z, Chang Y, Chater C, Cheeseman JM, Chen T, Clarke ND, Clayton H, Covshoff S, Crandall-Stotler BJ, Cross H, dePamphilis CW, Der JP, Determann R, Dickson RC, Di Stilio VS, Ellis S, Fast E, Feja N, Field KJ, Filatov DA, Finnegan PM, Floyd SK, Fogliani B, Garcia N, Gateble G, Godden GT, Goh F, Greiner S, Harkess A, Heaney JM, Helliwell KE, Heyduk K, Hibberd JM, Hodel RGJ, Hollingsworth PM, Johnson MTJ, Jost R, Joyce B, Kapralov MV, Kazamia E, Kellogg EA, Koch MA, Von Konrat M, Konyves K, Kutchan TM, Lam V, Larsson A, Leitch AR, Lentz R, Li FW, Lowe AJ, Ludwig M, Manos PS, Mavrodiev E, McCormick MK, McKain M, McLellan T, McNeal JR, Miller RE, Nelson MN, Peng YH, Ralph P, Real D, Riggins CW, Ruhsam M, Sage RF, Sakai AK, Scascitella M, Schilling EE, Schlosser EM, Sederoff H, Servick S, Sessa EB, Shaw AJ, Shaw SW, Sigel EM, Skema C, Smith AG, Smithson A, Stewart CN, Stinchcombe JR, Szovenyi P, Tate JA, Tiebel H, Trapnell D, Villegente M, Wang CN, Weller SG, Wenzel M, Weststrand S, Westwood JH, Whigham DF, Wu SX, Wulff AS, Yang Y, Zhu D, Zhuang CL, Zuidof J, Chase MW, Pires JC, Rothfels CJ, Yu J, Chen C, Chen L, Cheng SF, Li JJ, Li R, Li X, Lu HR, Ou YX, Sun X, Tan XM, Tang JB, Tian ZJ, Wang F, Wang J, Wei XF, Xu X, Yan ZX, Yang F, Zhong XN, Zhou FY, Zhu Y, Zhang Y, Ayyampalayam S, Barkman TJ, Nguyen NP, Matasci N, Nelson DR, Sayyari E, Wafula EK, Walls RL, Warnow T, An H, Arrigo N, Baniaga AE, Galuska S, Jorgensen SA, Kidder TI, Kong HH, Lu-Irving P, Marx HE, Qi XS, Reardon CR, Sutherland BL, Tiley GP, Welles SR, Yu RP, Zhan S, Gramzow L, Theissen G, Wong GKS
Nature, 574(7780), 679, 2019
5 Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits
Chen L, Qin Q, Jiang Y, Wang K, Lin ZS, Li ZP, Bibi F, Yang YZ, Wang JH, Nie WH, Su WT, Liu GC, Li QY, Fu WW, Pan XY, Liu C, Yang J, Zhang CZ, Yin Y, Wang Y, Zhao Y, Zhang C, Wang ZK, Qin YL, Liu W, Wang B, Ren YD, Zhang R, Zeng Y, da Fonseca RR, Wei B, Li R, Wan WT, Zhao RP, Zhu WB, Wang YT, Duan SC, Gao Y, Zhang YE, Chen CY, Hvilsom C, Epps CW, Chemnick LG, Doug Y, Mirarab S, Siegismund HR, Ryder OA, Gilbert MTP, Lewin HS, Zhang GJ, Heller R, Wang W
Science, 364(6446), 1152, 2019
6 A communal catalogue reveals Earth's multiscale microbial diversity
Thompson LR, Sanders JG, McDonald D, Amir A, Ladau J, Locey KJ, Prill RJ, Tripathi A, Gibbons SM, Ackermann G, Navas-Molina JA, Janssen S, Kopylova E, Vazquez-Baeza Y, Gonzalez A, Morton JT, Mirarab S, Xu ZZ, Jiang LJ, Haroon MF, Kanbar J, Zhu QJ, Song SJ, Kosciolek T, Bokulich NA, Lefler J, Brislawn CJ, Humphrey G, Owens SM, Hampton-Marcell J, Berg-Lyons D, McKenzie V, Fierer N, Fuhrman JA, Clauset A, Stevens RL, Shade A, Pollard KS, Goodwin KD, Jansson JK, Gilbert JA, Knight R
Nature, 551(7681), 457, 2017
7 Response to Comment on "Statistical binning enables an accurate coalescent-based estimation of the avian tree"
Mirarab S, Bayzid S, Boussau B, Warnow T
Science, 350(6257), -, 2015
8 Response to Comment on "Whole-genome analyses resolve early branches in the tree of life of modern birds"
Cracraft J, Houde P, Ho SYW, Mindell DP, Fjeldsa J, Lindow B, Edwards SV, Rahbek C, Mirarab S, Warnow T, Gilbert MTP, Zhang GJ, Braun EL, Jarvis ED
Science, 349(6255), -, 2015
9 Whole-genome analyses resolve early branches in the tree of life of modern birds
Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SYW, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Li JW, Zhang F, Li H, Zhou L, Narula N, Liu L, Ganapathy G, Boussau B, Bayzid MS, Zavidovych V, Subramanian S, Gabaldon T, Capella-Gutierrez S, Huerta-Cepas J, Rekepalli B, Munch K, Schierup M, Lindow B, Warren WC, Ray D, Green RE, Bruford MW, Zhan XJ, Dixon A, Li SB, Li N, Huang YH, Derryberry EP, Bertelsen MF, Sheldon FH, Brumfield RT, Mello CV, Lovell PV, Wirthlin M, Schneider MPC, Prosdocimi F, Samaniego JA, Velazquez AMV, Alfaro-Nunez A, Campos PF, Petersen B, Sicheritz-Ponten T, Pas A, Bailey T, Scofield P, Bunce M, Lambert DM, Zhou Q, Perelman P, Driskell AC, Shapiro B, Xiong ZJ, Zeng YL, Liu SP, Li ZY, Liu BH, Wu K, Xiao J, Yinqi X, Zheng QM, Zhang Y, Yang HM, Wang J, Smeds L, Rheindt FE, Braun M, Fjeldsa J, Orlando L, Barker FK, Jonsson KA, Johnson W, Koepfli KP, O'Brien S, Haussler D, Ryder OA, Rahbek C, Willerslev E, Graves GR, Glenn TC, McCormack J, Burt D, Ellegren H, Alstrom P, Edwards SV, Stamatakis A, Mindell DP, Cracraft J, Braun EL, Warnow T, Jun W, Gilbert MTP, Zhang GJ
Science, 346(6215), 1320, 2014
10 Statistical binning enables an accurate coalescent-based estimation of the avian tree
Mirarab S, Bayzid MS, Boussau B, Warnow T
Science, 346(6215), 1337, 2014