| 1 |
Theoretical Studies of Interactions between O-Phosphorylated and Standard Amino-Acid Side-Chain Models in Water
Wisniewska M, Sobolewski E, Oldziej S, Liwo A, Scheraga HA, Makowski M
Journal of Physical Chemistry B, 119(27), 8526, 2015 |
| 2 |
Toward Temperature-Dependent Coarse-Grained Potentials of Side-Chain Interactions for Protein Folding Simulations. II. Molecular Dynamics Study of Pairs of Different Types of Interactions in Water at Various Temperatures
Sobolewski E, Oldziej S, Wisniewska M, Liwo A, Makowski M
Journal of Physical Chemistry B, 116(23), 6844, 2012 |
| 3 |
Conformational Dynamics of the Trp-Cage Miniprotein at Its Folding Temperature
Halabis A, Zmudzinska W, Liwo A, Oldziej S
Journal of Physical Chemistry B, 116(23), 6898, 2012 |
| 4 |
Evidence, from Simulations, of a Single State with Residual Native Structure at the Thermal Denaturation Midpoint of a Small Globular Protein
Maisuradze GG, Liwo A, Oldziej S, Scheraga HA
Journal of the American Chemical Society, 132(27), 9444, 2010 |
| 5 |
Simple physics-based analytical formulas for the potentials of mean force for the interaction of amino acid side chains in water. IV. Pairs of different hydrophobic side chains
Makowski M, Sobolewski E, Czaplewski C, Oldziej S, Liwo A, Scheraga HA
Journal of Physical Chemistry B, 112(36), 11385, 2008 |
| 6 |
Modification and optimization of the united-residue (UNRES) potential energy function for canonical simulations. I. Temperature dependence of the effective energy function and tests of the optimization method with single training proteins
Liwo A, Khalili M, Czaplewski C, Kalinowski S, Oldziej S, Wachucik K, Scheraga HA
Journal of Physical Chemistry B, 111(1), 260, 2007 |
| 7 |
Simple physics-based analytical formulas for the potentials of mean force for the interaction of amino acid side chains in water. 3. Calculation and parameterization of the potentials of mean force of pairs of identical hydrophobic side chains
Makowski M, Sobolewski E, Czaplewski C, Liwo A, Oldziej S, No JH, Scheraga HA
Journal of Physical Chemistry B, 111(11), 2925, 2007 |
| 8 |
Potential of mean force of hydrophobic association: Dependence on solute size
Sobolewski E, Makowski M, Czaplewski C, Liwo A, Oldziej S, Scheraga HA
Journal of Physical Chemistry B, 111(36), 10765, 2007 |
| 9 |
Parametrization of backbone-electrostatic and multibody contributions to the UNRES force field for protein-structure prediction from ab initio energy surfaces of model systems
Liwo A, Oldziej S, Czaplewski C, Kozlowska U, Scheraga HA
Journal of Physical Chemistry B, 108(27), 9421, 2004 |
| 10 |
Optimization of the UNRES force field by hierarchical design of the potential-energy landscape. 1. Tests of the approach using simple lattice protein models
Liwo A, Arlukowicz P, Oldziej S, Czaplewski C, Makowski M, Scheraga HA
Journal of Physical Chemistry B, 108(43), 16918, 2004 |
