| 1 |
Noncanonical alpha/gamma Backbone Conformations in RNA and the Accuracy of Their Description by the AMBER Force Field
Zgarbova M, Jurecka P, Banas P, Havrila M, Sponer J, Otyepka M
Journal of Physical Chemistry B, 121(11), 2420, 2017 |
| 2 |
Microsecond-Scale MD Simulations of HIV-1 DIS Kissing-Loop Complexes Predict Bulged-In Conformation of the Bulged Bases and Reveal Interesting Differences between Available Variants of the AMBER RNA Force Fields
Havrila M, Zgarbova M, Jurecka P, Banas P, Krepl M, Otyepka M, Sponer J
Journal of Physical Chemistry B, 119(49), 15176, 2015 |
| 3 |
Reactive Conformation of the Active Site in the Hairpin Ribozyme Achieved by Molecular Dynamics Simulations with epsilon/zeta Force Field Reparametrizations
Mlynsky V, Kuhrova P, Zgarbova M, Jurecka P, Walter NG, Otyepka M, Sponer J, Banas P
Journal of Physical Chemistry B, 119(11), 4220, 2015 |
| 4 |
Noncanonical Hydrogen Bonding in Nucleic Acids. Benchmark Evaluation of Key Base-Phosphate Interactions in Folded RNA Molecules Using Quantum-Chemical Calculations and Molecular Dynamics Simulations
Zgarbova M, Jurecka P, Banas P, Otyepka M, Sponer JE, Leontis NB, Zirbel CL, Sponer J
Journal of Physical Chemistry A, 115(41), 11277, 2011 |
