Journal of Physical Chemistry B

Journal of Physical Chemistry B, Vol.116, No.23 Entire volume, number list

ISSN: 1520-6106 (Print)

In this Issue (49 articles)

6569 - 6571	Career Accomplishments of Harold A. Scheraga Hammes GG, Skolnick J
6572 - 6572	Biography of Harold A. Scheraga Hammes GG, Skolnick J
6598 - 6610	Experiments and Comprehensive Simulations of the Formation of a Helical Turn Jas GS, Hegefeld WA, Majek P, Kuczera K, Elber R
6611 - 6617	Dissecting the Kinetic Process of Amyloid Fiber Formation through Asymptotic Analysis Hong L, Qi XH, Zhang Y
6618 - 6627	DFT Energy Optimization of a Large Carbohydrate: Cyclomaltohexaicosaose (CA-26) Schnupf U, Momany FA
6628 - 6636	Absolute Free Energy of Binding of Avidin/Biotin, Revisited General IJ, Dragomirova R, Meirovitch H
6637 - 6644	Cross-Validation of the Structure of a Transiently Formed and Low Populated FF Domain Folding Intermediate Determined by Relaxation Dispersion NMR and CS-Rosetta Barette J, Velyvis A, Religa TL, Korzhnev DM, Kay LE
6645 - 6653	Folding Simulations of the A and B Domains of Protein G Kouza M, Hansmann UHE
6654 - 6664	Further Evidence for the Likely Completeness of the Library of Solved Single Domain Protein Structures Skolnick J, Zhou HY, Brylinski M
6665 - 6669	Limiting Values of the N-15 Chemical Shift of the Imidazole Ring of Histidine at High pH Vila JA
6670 - 6682	Structure Prediction of Loops with Fixed and Flexible Stems Subramani A, Floudas CA
6683 - 6693	Empirical Protein Partition Functions Poland D
6694 - 6706	Conformational Distributions and Hydrogen Bonding in Gel and Frozen Lipid Bilayers: A High Frequency Spin-Label ESR Study Dzikovski B, Tipikin D, Freed J
6707 - 6716	Theory of the Molecular Transfer Model for Proteins with Applications to the Folding of the src-SH3 Domain Liu ZX, Reddy G, Thirumalai D
6717 - 6724	Role of the N-Terminal Domain of the Chaperone ClpX in the Recognition and Degradation of Lambda Phage Protein O Thibault G, Houry WA
6725 - 6731	Combining Statistical Potentials with Dynamics-Based Entropies Improves Selection from Protein Decoys and Docking Poses Zimmermann MT, Leelananda SP, Kloczkowski A, Jernigan RL
6732 - 6739	Assessment of a Rule-Based Virtual Screening Technology (INDDEx) on a Benchmark Data Set Reynolds CR, Amini AC, Muggleton SH, Sternberg MJE
6740 - 6750	Proteogenic Amino Acids: Chiral and Racemic Crystal Packings and Stabilities Dunitz JD, Gavezzotti A
6751 - 6763	The Exciton Origin of the Visible Circular Dichroism Spectrum of Bacteriorhodopsin Pescitelli G, Woody RW
6764 - 6774	A Simple Model Predicts Experimental Folding Rates and a Hub-Like Topology Lane TJ, Pande VS
6775 - 6780	Translational Diffusion Measurements by Microcoil NMR in Aqueous Solutions of the Fos-10 Detergent-Solubilized Membrane Protein OmpX Horst R, Stanczak P, Serrano P, Wuthrich K
6781 - 6788	Multilevel X-Pol: A Fragment-Based Method with Mixed Quantum Mechanical Representations of Different Fragments Wang YJ, Sosa CP, Cembran A, Truhlar DG, Gao JL
6789 - 6797	Domain-Swapped Dimeric Structure of a Stable and Functional De Novo Four-Helix Bundle Protein, WA20 Arai R, Kobayashi N, Kimura A, Sato T, Matsuo K, Wang AF, Platt JM, Bradley LH, Hecht MH
6798 - 6805	Side Chain Independent Recognition of Aminoacyl Adenylates by the Hint1 Transcription Suppressor Wang J, Fang PF, Schimmel P, Guo M
6806 - 6809	Physical Microscopic Model of Proteins Under Force Dokholyan NV
6810 - 6818	Comparative Molecular Dynamics Simulation Study of Crystal Environment Effect on Protein Structure Terada T, Kidera A
6819 - 6831	Assembly of the Five-Way Junction in the Ribosomal Small Subunit Using Hybrid MD-Go Simulations Chen K, Eargle J, Lai J, Kim H, Abeysirigunawardena S, Mayerle M, Woodson S, Ha T, Luthey-Schulten Z
6832 - 6843	Structural and Electrostatic Asymmetry at the Active Site in Typical and Atypical Peroxiredoxin Dimers Salsbury FR, Yuan Y, Knaggs MH, Poole LB, Fetrow JS
6844 - 6853	Toward Temperature-Dependent Coarse-Grained Potentials of Side-Chain Interactions for Protein Folding Simulations. II. Molecular Dynamics Study of Pairs of Different Types of Interactions in Water at Various Temperatures Sobolewski E, Oldziej S, Wisniewska M, Liwo A, Makowski M
6854 - 6861	Fitting Multimeric Protein Complexes into Electron Microscopy Maps Using 3D Zernike Descriptors Esquivel-Rodriguez J, Kihara D
6862 - 6871	Improved Atomistic Monte Carlo Simulations Demonstrate That Poly-L-Proline Adopts Heterogeneous Ensembles of Conformations of Semi-Rigid Segments Interrupted by Kinks Radhakrishnan A, Vitalis A, Mao AH, Steffen AT, Pappu RV
6872 - 6879	Protein-Ligand Binding Free Energies from Exhaustive Docking Purisima EO, Hogues H
6880 - 6888	Mirror Images as Naturally Competing Conformations in Protein Folding Noel JK, Schug A, Verma A, Wenzel W, Garcia AE, Onuchic JN
6889 - 6897	Catalytic Mechanism of 4-Oxalocrotonate Tautomerase: Significances of Protein-Protein Interactions on Proton Transfer Pathways Wu P, Cisneros GA, Hu H, Chaudret R, Hu XQ, Yang WT
6898 - 6907	Conformational Dynamics of the Trp-Cage Miniprotein at Its Folding Temperature Halabis A, Zmudzinska W, Liwo A, Oldziej S
6908 - 6915	Polymorphism of Collagen Triple Helix Revealed by F-19 NMR of Model Peptide [Pro-4(R)-Hydroxyprolyl-Gly](3)-[Pro-4(R)-Fluoroprolyl-Gly]-[Pro-4(R)-Hy droxyprolyl-Gly](3) Kawahara K, Nemoto N, Motooka D, Nishi Y, Doi M, Uchiyama S, Nakazawa T, Nishiuchi Y, Yoshida T, Ohkubo T, Kobayashi Y
6916 - 6922	Folding Models of Mini-Protein FSD-1 Lee IH, Kim SY, Lee J
6923 - 6935	Quantitative Nanoscale Analysis of IgE-Fc epsilon RI Clustering and Coupling to Early Signaling Proteins Veatch SL, Chiang EN, Sengupta P, Holowka DA, Baird BA
6936 - 6944	Simple Liquid Models with Corrected Dielectric Constants Fennell CJ, Li LB, Dill KA
6945 - 6951	Subsurface Femtosecond Tissue Alteration: Selectively Photobleaching Macular Degeneration Pigments in Near Retinal Contact Manevitch Z, Lewis A, Levy C, Zeira E, Banin E, Manevitch A, Khatchatouriants A, Pe'er J, Galun E, Hemo I
6952 - 6959	Exploring Protein Flexibility: Incorporating Structural Ensembles From Crystal Structures and Simulation into Virtual Screening Protocols Osguthorpe DJ, Sherman W, Hagler AT
6960 - 6965	Homodimerization of the PAS-B Domains of Hypoxia-Inducible Factors Zhu J, Martinez-Yamout M, Cardoso R, Yan JL, Love RA, Grodsky N, Brooun A, Dyson HJ
6966 - 6979	Ion Binding Sites and Their Representations by Reduced Models Roux B
6980 - 6990	Dynamics of Methionine Ligand Rebinding in Cytochrome c Zhang P, Malolepsza E, Straub JE
6991 - 6999	Substrate and Enzyme Functional Groups Contribute to Translational Quality Control by Bacterial Prolyl-tRNA Synthetase Kumar S, Das M, Hadad CM, Musier-Forsyth K
7000 - 7005	A- to B-Form Transition in DNA Between Gold Surfaces Lee OS, Cho VY, Schatz GC
7006 - 7013	Unusual Arginine Formations in Protein Function and Assembly: Rings, Strings, and Stacks Neves MAC, Yeager M, Abagyan R
7014 - 7025	Microsecond Folding Dynamics of Apomyoglobin at Acidic pH Xu M, Beresneva O, Rosario R, Roder H
7026 - 7032	From Coarse-Grained to Atomic-Level Characterization of Protein Dynamics: Transition State for the Folding of B Domain of Protein A Kmiecik S, Gront D, Kouza M, Kolinski A