Journal of Physical Chemistry B

Journal of Physical Chemistry B, Vol.117, No.42 Entire volume, number list

ISSN: 1520-6106 (Print)

In this Issue (73 articles)

12669 - 12671	Tribute to Peter G. Wolynes Eaton WA, Gruebele M, Lubchenko V, Onuchic JN
12672 - 12675	A Scientific Memoir Wolynes PG
12689 - 12694	On the Derivation of Equilibrium Relaxation Times from Aging Experiments Richert R, Lunkenheimer P, Kastner S, Loidl A
12695 - 12701	Speed-Selectivity Paradox in the Protein Search for Targets on DNA: Is It Real or Not? Veksler A, Kolomeisky AB
12702 - 12716	Counterion Density Profile around Charged Cylinders: The Strong-Coupling Needle Limit Mallarino JP, Tellez G, Trizac E
12717 - 12723	Visualizing Basins of Attraction for Different Minimization Algorithms Asenjo D, Stevenson JD, Wales DJ, Frenkel D
12724 - 12733	Highly Stable Glasses of cis-Decalin and cis/trans-Decalin Mixtures Whitaker KR, Scifo DJ, Ediger MD, Ahrenberg M, Schick C
12734 - 12741	Molecular Binoculars: How to Spatially Resolve Environmental Fluctuations by Following Two or More Single-Molecule Spectral Trails at a Time Lubchenko V, Silbey RJ
12742 - 12749	Probing the Physical Determinants of Thermal Expansion of Folded Proteins Dellarole M, Kobayashi K, Rouget JB, Caro JA, Roche J, Islam MM, Garcia-Moreno EB, Kuroda Y, Royer CA
12750 - 12758	Entanglement and Polyradical Character of Polycyclic Aromatic Hydrocarbons Predicted by Projected Hartree-Fock Theory Rivero P, Jimenez-Hoyos CA, Scuseria GE
12759 - 12768	Population Based Reweighting of Scaled Molecular Dynamics Sinko W, Miao YL, de Oliveira CAF, McCammon JA
12769 - 12776	Rapid Exploration of Configuration Space with Diffusion-Map-Directed Molecular Dynamics Zheng WW, Rohrdanz MA, Clementi C
12777 - 12786	Local Moment Formation and Kondo Screening in Impurity Trimers Mitchell AK, Jarrold TF, Galpin MR, Logan DE
12787 - 12799	How Kinetics within the Unfolded State Affects Protein Folding: An Analysis Based on Markov State Models and an Ultra-Long MD Trajectory Deng NJ, Dai W, Levy RM
12800 - 12806	Single-Molecule FRET Studies of RNA Folding: A Diels-Alderase Ribozyme with Photolabile Nucleotide Modifications Kobitski AY, Schafer S, Nierth A, Singer M, Jaschke A, Nienhaus GU
12807 - 12819	Quantifying the Mechanism of Phosphate Monoester Hydrolysis in Aqueous Solution by Evaluating the Relevant Ab Initio QM/MM Free-Energy Surfaces Plotnikoy NV, Prasad BR, Chakrabarty S, Chu ZT, Warshel A
12820 - 12828	Thermal Boundary Conductance and Thermal Rectification in Molecules Leitner DM
12829 - 12835	Thermostated Hamiltonian Dynamics with Log Oscillators Campisi M, Hanggi P
12836 - 12843	Boltzmann's H-Function and Diffusion Processes Hubbard JB, Lund SP, Halter M
12844 - 12849	Nucleation Dynamics of Active Particles Shen TY, Qi XH, Nellas RB
12850 - 12856	Glassy Dynamics, Cell Mechanics, and Endothelial Permeability Hardin C, Rajendran K, Manomohan G, Tambe DT, Butler JP, Fredberg JJ, Martinelli R, Carman CV, Krishnan R
12857 - 12863	Correlated Motions and Residual Frustration in Thrombin Fuglestad B, Gasper PM, McCammon JA, Markwick PRL, Komives EA
12864 - 12877	Entropic Mechanism of Allosteric Communication in Conformational Transitions of Dihydrofolate Reductase Terada TP, Kimura T, Sasai M
12878 - 12886	Becoming a Peroxidase: Cardiolipin-Induced Unfolding of Cytochrome c Muenzner J, Toffey JR, Hong YN, Pletneva EV
12887 - 12897	Detecting Repetitions and Periodicities in Proteins by Tiling the Structural Space Parra RG, Espada R, Sanchez IE, Sippl MJ, Ferreiro DU
12898 - 12907	Rotational Relaxation in ortho-Terphenyl: Using Atomistic Simulations to Bridge Theory and Experiment Eastwood MP, Chitra T, Jumper JM, Palmo K, Pan AC, Shaw DE
12908 - 12934	Landscape Framework and Global Stability for Stochastic Reaction Diffusion and General Spatially Extended Systems with Intrinsic Fluctuations Wu W, Wang J
12935 - 12942	Atomistic Description of the Folding of a Dimeric Protein Piana S, Lindorff-Larsen K, Shawa DE
12943 - 12952	Sequence-Dependent Base-Stacking Stabilities Guide tRNA Folding Energy Landscapes Li RZ, Ge HMW, Cho SS
12953 - 12965	Origins of the Helical Wrapping of Phenyleneethynylene Polymers about Single-Walled Carbon Nanotubes Von Bargen CD, MacDermaid CM, Lee OS, Deria P, Therien MJ, Saven JG
12966 - 12971	"Tunneling Two-Level Systems" Model of the Low-Temperature Properties of Glasses: Are "Smoking-Gun" Tests Possible? Leggett AJ, Vural DC
12972 - 12978	Tensor Hypercontraction Equation-of-Motion Second-Order Approximate Coupled Cluster: Electronic Excitation Energies in O(N-4) Time Hohenstein EG, Kokkila SIL, Parrish RM, Martinez TJ
12979 - 12994	Exact Theory of Dense Amorphous Hard Spheres in High Dimension. II. The High Density Regime and the Gardner Transition Kurchan J, Parisi G, Urbani P, Zamponi F
12995 - 13004	A Minimal Transcriptional Controlling Network of Regulatory T Cell Development Liao C, Lu T
13005 - 13014	Weak Frustration Regulates Sliding and Binding Kinetics on Rugged Protein-DNA Landscapes Marcovitz A, Levy Y
13015 - 13028	Intramolecular Distances and Dynamics from the Combined Photon Statistics of Single-Molecule FRET and Photoinduced Electron Transfer Haenni D, Zosel F, Reymond L, Nettels D, Schuler B
13029 - 13037	Subdomain Architecture and Stability of a Giant Repeat Protein Tsytlonok M, Sormanni P, Rowling PJE, Vendruscolo M, Itzhaki LS
13038 - 13050	Small pH and Salt Variations Radically Alter the Thermal Stability of Metal-Binding Domains in the Copper Transporter, Wilson Disease Protein Nilsson L, Aden J, Niemiec MS, Nam K, Wittung-Stafshede P
13051 - 13057	Energy Evaluation of beta-Strand Packing in a Fibril-Forming SH3 Domain Yang SC, Ravikumar KM, Levine H
13058 - 13068	Mapping Polymerization and Allostery of Hemoglobin S Using Point Mutations Weinkam P, Sali A
13069 - 13081	Quantitative Reflection Imaging of Fixed Aplysia californica Pedal Ganglion Neurons on Nanostructured Plasmonic Crystals Le AP, Kang S, Thompson LB, Rubakhin SS, Sweedler JV, Rogers JA, Nuzzo RG
13082 - 13089	Experimental Characterization of Electrostatic and Conformational Heterogeneity in an SH3 Domain Adhikary R, Zimmermann J, Liu J, Dawson PE, Romesberg FE
13090 - 13097	Dodine as a Protein Denaturant: The Best of Two Worlds? Gelman H, Perlova T, Gruebele M
13098 - 13106	Evolutionary Pressure on the Topology of Protein Interface Interaction Networks Johnson ME, Hummer G
13107 - 13114	Force-Induced Unzipping Transitions in an Athermal Crowded Environment Pincus DL, Thirumalai D
13115 - 13119	Diffusion along the Splitting/Commitment Probability Reaction Coordinate Berezhkovskii AM, Szabo A
13120 - 13131	Gradual Disordering of the Native State on a Slow Two-State Folding Protein Monitored by Single-Molecule Fluorescence Spectroscopy and NMR Campos LA, Sadqi M, Liu JW, Wang X, English DS, Munoz V
13132 - 13144	Quantum Suppression of Ratchet Rectification in a Brownian System Driven by a Biharmonic Force Kato A, Tanimura Y
13145 - 13153	Finding New Superconductors: The Spin-Fluctuation Gateway to High T-c and Possible Room Temperature Superconductivity Pines D
13154 - 13163	Nucleation of a Stable Solid from Melt in the Presence of Multiple Metastable Intermediate Phases: Wetting, Ostwald's Step Rule, and Vanishing Polymorphs Santra M, Singh RS, Bagchi B
13164 - 13174	Tristability in Cancer-Associated MicroRNA-TF Chimera Toggle Switch Lu MY, Jolly MK, Gomoto R, Huang B, Onuchic J, Ben-Jacob E
13175 - 13181	Measuring Competitive Fitness in Dynamic Environments Razinkov IA, Baumgartner BL, Bennett MR, Tsimring LS, Hasty J
13182 - 13193	Allostery and Folding of the N-terminal Receiver Domain of Protein NtrC Tripathi S, Portman JJ
13194 - 13205	Effect of Phenotypic Selection on Stochastic Gene Expression Mora T, Walczak AM
13206 - 13211	Intrachain Contact Dynamics in Unfolded Cytochrome cb(562) Ford NDB, Shin DW, Gray HB, Winkler JR
13212 - 13218	Folding Coupled with Assembly in Split Green Fluorescent Proteins Studied by Structure-based Molecular Simulations Ito M, Ozawa T, Takada S
13219 - 13225	Binding and Folding of the Small Bacterial Chaperone HdeA Ahlstrom LS, Dickson A, Brooks CL
13226 - 13234	Mutations in DNA-Binding Loop of NFAT5 Transcription Factor Produce Unique Outcomes on Protein-DNA Binding and Dynamics Li MH, Shoemaker BA, Thangudu RR, Ferraris JD, Burg MB, Panchenko AR
13235 - 13244	How Well Does a Funneled Energy Landscape Capture the Folding Mechanism of Spectrin Domains? Best RB
13245 - 13258	A Nanobody Binding to Non-Amyloidogenic Regions of the Protein Human Lysozyme Enhances Partial Unfolding but Inhibits Amyloid Fibril Formation De Genst E, Chan PH, Pardon E, Hsu STD, Kumita JR, Christodoulou J, Menzer L, Chirgadze DY, Robinson CV, Muyldermans S, Matagne A, Wyns L, Dobson CM, Dumoulin M
13259 - 13267	Dynamic Length Scales in Glass-Forming Liquids: An Inhomogeneous Molecular Dynamics Simulation Approach Kim K, Saito S, Miyazaki K, Biroli G, Reichman DR
13268 - 13277	Double Resolution Model for Studying TMAO/Water Effective Interactions Larini L, Shea JE
13278 - 13290	Density Functional Theory for Protein Transfer Free Energy Mills EA, Plotkin SS
13291 - 13300	Structure and Dynamics of Urea/Water Mixtures Investigated by Vibrational Spectroscopy and Molecular Dynamics Simulation Carr JK, Buchanan LE, Schmidt JR, Zanni MT, Skinner JL
13301 - 13307	Dynamics and the Free-Energy Landscape of Proteins, Explored with the Mossbauer Effect and Quasi-Elastic Neutron Scattering Frauenfelder H, Young RD, Fenimore PW
13308 - 13321	Single-Particle Tracking Reveals Switching of the HIV Fusion Peptide between Two Diffusive Modes in Membranes Ott M, Shai Y, Haran G
13322 - 13334	Multielement NMR Studies of the Liquid-Liquid Phase Separation and the Metal-to-Nonmetal Transition in Fluid Lithium- and Sodium-Ammonia Solutions Lodge MTJH, Cullen P, Rees NH, Spencer N, Maeda K, Harmer JR, Jones MO, Edwards PP
13335 - 13345	Structural Intermediates and Folding Events in the Early Assembly of the Ribosomal Small Subunit Lai J, Chen K, Luthey-Schulten Z
13346 - 13356	Remarkably Fast Coupled Folding and Binding of the Intrinsically Disordered Transactivation Domain of cMyb to CBP KIX Shammas SL, Travis AJ, Clarke J
13357 - 13366	Quantum-Classical Path Integral with Self-Consistent Solvent-Driven Reference Propagators Banerjee T, Makri N
13367 - 13377	Characterization of Folding Mechanisms of Trp-Cage and WW-Domain by Network Analysis of Simulations with a Hybrid-Resolution Model Han W, Schulten K
13378 - 13387	Modeling Spatial Correlation of DNA Deformation: DNA Allostery in Protein Binding Xu XL, Ge H, Gu C, Gao YQ, Wang SS, Thio BJR, Hynes JT, Xie XS, Cao JS
13388 - 13396	Molecular Transport Modulates the Adaptive Response of Branched Actin Networks to an External Force Hu LH, Papoian GA