The flavonoids have been the target of several experimental works due to its influence in the human health as antioxidant elements. The fluorescence properties of these compounds have been widely studied due to the large Stokes shifts experimentally observed and the variety of processes that lead to the fluorescence. In the present work the role of the solvent in the large Stokes shift experimentally observed in the daidzein molecular system in water is theoretically studied. Also studied is the nonfluorescent decay mechanism in a polar aprotic solvent like acetonitrile. The solvent effect in the ground and in the low-lying excited electronic states is taken into account by using the sequential-QM/MM methodology. Excited state properties like equilibrium geometries and transition energies were studied by using multiconfigurational calculations, CASSCF and CASPT2. The excited electronic state responsible for the fluorescence spectrum in water was identified, and the large Stokes shift seems to be the result of the large interaction of the system in this electronic state with the solvent. On the other hand, spin-orbit coupling calculations, between the singlet and triplet electronic states, indicate favorable conditions for intersystem crossing, in agreement with the experimental result of nonfluorescence observation.