This paper shows by thorough electrochemical investigation that (1) the performances of high-temperature polymer electrolyte fuel cell membrane electrode assemblies of three suppliers are differently affected by compressive forces. (2) Membrane thickness reduction by compressive pressure takes place less than expected. (3) A contact pressure cycling experiment is a useful tool to distinguish the impact of compression on the contact resistances bipolar plate/gas diffusion layer (GDL) and GDL/catalytic layer. A detailed visual insight into the structural effects of compressive forces on membrane and gas diffusion electrode (GDE) is obtained by micro-computed X-ray tomography (mu-CT). mu-CT imaging confirms that membrane and GDEs undergo severe mechanical stress resulting in performance differences. Irreversible GDL deformation behavior and pinhole formation by GDL fiber penetration into the membrane could be observed.