The shift of microbial community under the adjustment of different pH was analyzed by denaturing gradient gel electrophoresis (DGGE). The results indicated, at initial pH 1.0, 2.0 and 3.0, the copper extraction in 22 days amounted to 84.6%, 88.2% and 77.5%, respectively; however, when the initial pH was 2.0, processing pH was adjusted to 1.0 and 3.0 on day 16, the copper extraction in 32 days was 85% and 62.6%, respectively. DGGE analysis showed Acidithiobacillus caldus, Leptospirillum ferriphilum, Sulfobacillus thermosulfidooxidans and Ferroplasma thermophilum existed in bioleaching systems. At initial pH 1.0 and 3.0, S. thermosulfidooxidans and A. caldus were main microorganisms. While at initial pH 2.0, L. ferriphilum, A. caldus and S. thermosulfidooxidans were always detected. At processing pH 1.0 and 3.0, the adjustment of pH greatly inhibited the growth of L. ferriphilum; it was also found microbial community would recover gradually only if pH stimulation did not fatally affect microorganisms. (C) 2014 Elsevier Ltd. All rights reserved.