The influence of an algae species based on the biodiesel yield was investigated by using a combined plant model from the literature. The model has six different processes: algal cultivation, the flocculation and separation process, biodiesel production, anaerobic digestion, scrubbing, and combined heat and power (CHP). The data model in the literature was operated with the values for Chlorella vulgaris. To investigate the roles of the algae species on the biodiesel yield in the model, two different algae species, Nannochloropsis sp. and Haematococcus pluvialis, were selected. Depending on the data from these algae in the literature, three different scenarios were modeled in the study. The model shows that all of the scenarios for biodiesel production can be totally independent of an external energy supply. Energy estimations for all of the applications scenarios show that the system produces more energy than the amount that is required for the processing operation. (C) 2013 Elsevier Ltd. All rights reserved.