A novel magnetic nano-sorbent was synthesized by Schiff's base formation via covalent bonding of gelatin to the surface of nano-magnetite-immobilized-3-aminopropyltrimethoxysilane (Nano-Fe3O4-Si-N=Gelatin). The structure was confirmed by the FT-IR, TGA, and SEM. The maximum capacity of Cd(II) and Pb(II) were identified as 440 and 400 mu mol g(-1), respectively. The separation characteristics were evaluated in presence of various controlling factors. The sorption processes of Cd(II) and Pb(II) were found to follow the postulates of Langmuir, Brunauer-Emmer-Teller, and Dubinin Radushkevich isotherm models. The potential applications of Nano-Fe3O4-Si-N=Gelatin in water treatment of Cd(II) and Pb(II) were successfully accomplished using a micro-column technique.