Chemical Physics Letters, Vol.671, 63-70, 2017
Influence of protein crowder size on hydration structure and dynamics in macromolecular crowding
We investigate the effects of protein crowder sizes on hydration structure and dynamics in macromolecular crowded systems by all-atom MD simulations. The crowded systems consisting of only small proteins showed larger total surface areas than those of large proteins at the same volume fractions. As a result, more water molecules were trapped within the hydration shells, slowing down water diffusion. The simulation results suggest that the protein crowder size is another factor to determine the effect of macromolecular crowding and to explain the experimental kinetic data of proteins and DNAs in the presence of crowding agents. (C) 2017 Published by Elsevier B.V.
Keywords:Macromolecular crowding;Solvent accessible surface area;Hydration;Diffusion coefficient;Protein crowders