Journal of Physical Chemistry, Vol.100, No.7, 2564-2566, 1996
B-Transition to A-Transition of DNA on the Nanosecond Time-Scale
A 3.5-ns atomic-level computer simulation of a DNA solution was performed. We found that a dodecamer of DNA, which contains the recognition site for Eco RI endonuclease, transforms from B-form to A-form in 0.45 M salt water. This supports an earlier proposal on the A-DNA binding site for transcription factor IIIA.
Keywords:TRANSCRIPTION FACTOR-IIIA;BINDING-SITE;CONFORMATION;DYNAMICS;DODECAMER;SEQUENCE;DUPLEX;GENE;FORM;NMR