Photosynthetic organisms harvest light energy, utilizing the absorption and energy-transfer properties of protein-bound chromophores. Controlling the harvesting efficiency is critical for the optimal function of the photosynthetic apparatus. Here, we show that the cyanobacterial light-harvesting antenna complex may be able to regulate the flow of energy to switch reversibly from efficient energy conversion to photoprotective quenching via a structural change. We isolated cyanobacterial light-harvesting proteins, phycocyanin and allophycocyanin, and measured their optical properties in solution and in an aggregated-desiccated state. The results indicate that energy band structures are changed, generating a switch between the two modes of operation, exciton transfer and quenching, achieved without dedicated carotenoid quenchers. This flexibility can contribute greatly to the large dynamic range of cyanobacterial light-harvesting systems.