The morphology-controlled synthesis of nano-structure photocatalyst have leaded a new possibility to improve their physical and chemical properties. Herein, Bi2WO6 nanocrystals (BWO) with nano-flower, nano plates, knot shape, rod like and irregular morphologies have been successfully synthesized through a highly facile hydrothermal process by simply adjusting pH values, reactive solvents and temperature. Photocatalytic activity of the as-prepared samples were evaluated by degradation of Ceftriaxone sodium under visible light irradiation (lambda > 420 nm), the results indicated that all the BWO samples exhibit morphology-associated photocatalytic activity, and the 3D flowerlike-structure of BWO composed of well-ordered nano plates (BWO-D-5) displayed the outstanding photocatalytic activity. Through getting insight into the mechanism, h(+) and O-center dot(2)- play major roles compared with (OH)-O-center dot in photocatalytic degradation process. The possible pathway of Ceftriaxone sodium and the intermediates were proposed to better understand the reaction process. Moreover, this work not only provides an example of morphology-dependent photocatalytic activity of BWO but also provides an illustrative example for removing organic pollutant molecules according to practical requirements. (C) 2017 Elsevier B.V. All rights reserved.