The influence of the daily and seasonal variations of environmental conditions on the quality of the upgraded biogas was evaluated in an outdoors pilot scale high rate algal pond (HRAP) interconnected to an external absorption column (AC) via a conical settler. The high alkalinity in the cultivation broth resulted in a constant biomethane composition during the day regardless of the monitored month, while the high algal-bacterial activity during spring and summer boosted a superior biomethane quality. CO2 concentrations in the upgraded biogas ranged from 0.1% in May to 11.6% in December, while a complete H2S removal was always achieved regardless of the month. A limited N-2 and O-2 stripping from the scrubbing cultivation broth was recorded in the upgraded biogas at a recycling liquid/biogas ratio in the AC of 1. Finally, CH4 concentration in the upgraded biogas ranged from 85.6% in December to 99.6% in August.