The effect of Zn2+ on ammonium and phosphorous removal and duckweed growth was evaluated for treatment of anaerobically digested swine wastewater (ADSW) at various initial Zn2+ concentrations ranging from 1.0 to 15 mg/L. Lemna aequinoctialis taken from a local pond was selected for the treatment, and its fresh weight and contents of proteins, photosynthetic pigments, and vitamin E were examined. Results showed that the optimal Zn2+ concentration was 5.0 mg/L for NH3-N and TP removal, the duckweed growth, and the accumulation of proteins in the duckweed. A maximum content of photosynthetic pigments increased with the increase of initial Zn2+ concentration, and it arrived earlier for a higher concentration of Zn2+. Vitamin E content in the duckweed reached 4.5 mg/kg at 15 mg/L Zn2+ in 12-day cultivation, which showed the potential for producing and harvesting a high value-added product of vitamin E by culturing duckweed in ADSW.