Four reverse osmosis (RO) composite membranes, in which thin-film active layers were polyphenyl esters, were prepared by interfacial polymerization of a series of bisphenol monomers and trimesoyl chloride (TMC). An atomic force microscope (AFM) was used to investigate the surface morphology and RO experiments were carried out to measure the rejection and flux characteristics of the membranes. Correlations between the inherent chemical nature of bisphenols possessing structural variations in the middle of phenyl rings and the surface morphology/RO performance of the membranes were studied. Polarity of the connectors between two phenyl rings of bisphenols played an important role in determining the surface morphology and RO performance. Nonpolar bisphenol gave a morphology of uniform, distinct nodular corrugation and a superior RO rejection but a relatively low flux, while the polar one resulted in an irregular, ambiguous nodule structure and a high flux. The size of the bisphenol connectors was also found to be important; the smaller one was more favorable for the formation of membrane with better salt rejection, while the larger one contributed to higher flux.