We report results from neutron diffraction with polarization analysis of the effect of In dopant level on the hydrogen concentration in hydrated samples of the proton conducting perovskite type oxide BaZr1-xInxO3-x/2 with x = 0, 0.175, 0.20, 0.225, 0.25, and 0.275. Analysis of the neutron data establishes a trend of increasing hydrogen concentration, which is comparable to that obtained from thermogravimetric measurements on the same samples, as well as an increased unit-cell size and local structural disorder as a function of increasing In dopant level. These results encourage further use of neutron diffraction with polarization analysis as a non-destructive technique for the determination of the total hydrogen concentration, and structural properties, of proton conducting oxides as well as other hydrogen-containing materials.