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Journal of the American Chemical Society, Vol.116, No.16, 6995-7005, 1994
A New DNA Minor-Groove Binding Motif - Cross-Linked Lexitropsins
The nitrogen atoms of central pyrrole rings on two separate tripyrrolecarboxamide strands were covalently linked through poly(methylene) chains to provide a novel class of lexitropsins potentially capable of B-DNA double-strand reading via the minor groove, CD titration experiments revealed increasingly enhanced binding of 1:1 stoichiometry to the poly(dA-dT)-poly(dA-dT) DNA from the tetrakis(methylene) linkage to the heptakis(methylene) linkage, suggesting gradually growing importance of the bidentate antiparallel side by side binding. Ethidium bromide fluorescence displacement experiments on both poly(dA-dT)-poly(dA-dT) and poly(dA)-poly(dT) DNA’s supported this analysis by providing quantitative measurement of intrinsic binding constants. The heptakis(methylene) linkage offered a binding enhancement of approximately 1000 times compared with that of the monomer.
Keywords:ANTI-TUMOR AGENTS;SEQUENCE-SPECIFIC RECOGNITION;DISTAMYCIN-A;ANTIBIOTIC DISTAMYCIN;COOPERATIVE BINDING;COMPLEX;DESIGN;NMR;NETROPSIN;ETHIDIUM