Species in extreme habitats increasingly face changes in seasonal climate, but the demographic mechanisms through which these changes affect population persistence remain unknown. We investigated how changes in seasonal rainfall and temperature influence vital rates and viability of an arid environment specialist, the Kalahari meerkat, through effects on body mass. We show that climate change-induced reduction in adult mass in the prebreeding season would decrease fecundity during the breeding season and increase extinction risk, particularly at low population densities. In contrast, a warmer nonbreeding season resulting in increased mass and survival would buffer negative effects of reduced rainfall during the breeding season, ensuring persistence. Because most ecosystems undergo seasonal climate variations, a full understanding of species vulnerability to global change relies on linking seasonal trait and population dynamics.