2,4,6-Trichlorophenol (TCP) was bioelectrochemically treated in anodic and cathodic compartments of two identical dual chambered microbial fuel cells MFC-A and MFC-B under anaerobic and aerobic conditions, respectively, and energy was recovered in the form of electricity. It was observed that MFC-B with bio-cathodic treatment of TCP outcompeted the MFC-A with bio-anodic treatment. The maximum power density for MFC-A with bio-anode was found to be 446.76 mW/m(2) while for MFC-B with bio-cathode it was 1059.58 mW/m(2). The MFC-B consistently showed higher coulombic efficiency, power density and chemical oxygen demand removal efficiency indicating the better performance of the MFC-B as compared to the MFC-A. Scanning electron micrograph also confirmed better accumulation of microbes on the anode of MFC-B and hence its better performance in terms of energy recovery. Some major genera present in the microbial community were quantified using quantitative real-time polymerase chain reaction technique. It also confirmed the dominance of electroactive species in the bio-anodic sludge of MFC-B over the bio-anodic sludge of MFC-A. Cyclic voltammogram also asserted better electrochemical activity of the bio-cathode in the treatment of chlorinated phenol toxicants in MFC-B system. The study shows that MFC can be a viable option in treatment of recalcitrant chemical compounds like TCP with the generation of energy in the form of electrical power. (C) 2018, The Society for Biotechnology, Japan. All rights reserved.