This research focuses on the adsorption and molecular scale communication mechanism of PbS-BDY (BDY, boron dipyrromethene), a nanohybrid system of nanocrystal (NC) and a pi-conjugated molecule, investigated through the electrogenerated chemiluminescence (ECL) spooling spectra and multivariate analysis. The results show that the charge transmitted from the excited state of BDY+ to the surface states of PbS NCs leads to emission quenching of BDY and emission enhancement of PbS NCs at 986 nm. Also, the essence tendency of unpassivated sulfur atoms on (100) facets of the PbS NCs acts as a force for adsorption of PbS NCs on the surface of Pt electrode. This phenomenon was proved by conjugation of BDY as an ECL active compound to the PbS NCs and multivariate analysis of augmented data at different scan rates. The obtained results from multivariate analysis reveal that adsorption of PbS-BDY and charge transfer from BDY to surface states of PbS NCs are independent of the scan rate.