Co-production of hydrogen and methane by two-phase anaerobic digestion (AD) may offer a sustainable solution for the centralized treatment of food waste (FW), while ammonia accumulation is potentially encountered. A mesophilic two-phase AD was investigated for hydrogen and methane production from FW at varying ammonia concentrations. The process achieved a hydrogen yield of 47.7 mL/g VS and a methane yield of 335 mL/g VS by optimizing the organic loading rate (OLR) and recirculation ratio. Total ammonia nitrogen (TAN) concentration of 4044 mg/L corresponded to a threshold in the hydrogen reactor, above which ammonia would initiate inhibition of hydrogenogenesis and acidogenesis. Methane yield was recovered in the methane reactor after acute inhibiting effects of TAN below 5800 mg/L, while TAN above 6200 mg/L caused chronic inhibition of methanogens. Adjusting hydraulic retention time (HRT) and recirculation ratio in hydrogen and methane Methanogenesis reactors reduced TAN to 960 and 2105 mg/L respectively, resulting in successful recovery was achieved in the hydrogen reactor but not in the methane reactor. The two-phase AD for methane and hydrogen production can be a promising solution for ammonia accumulation in AD from FW. (C) 2019 Hydrogen Energy Publications LLC. Published by Elsevier Ltd. All rights reserved.