Journal of the American Chemical Society, Vol.120, No.45, 11749-11757, 1998
Acrylamide quenching of protein phosphorescence as a monitor of structural fluctuations in the globular fold
This study examines acrylamide quenching of tryptophan room-temperature phosphorescence in proteins and the role that factors such as long-range interactions and environment-dependent quenching efficiency might play in the interpretation of bimolecular quenching rate constants in terms of hindered quencher migration through the globular fold. The distance dependence of the through-space quenching rate is evaluated by studying the effects of acrylamide on the phosphorescence intensity and decay kinetics-of the indole analogue 2-(3-indoyl)ethyl phenyl ketone in propylene glycol/buffer glasses, at 120 K. Both steady-state and kinetic data are satisfactorily fitted by an exponential distance dependence of the rate, k(r) =; k(0) exp[-(r - r(0))/r(e)], with a contact rate k(0) = 1.2 x 10(8) s(-1) and an attenuation length r(e) = 0.29 Angstrom. For a phosphorescence lifetime of 5 s, this rate yields an average interaction distance of 10 Angstrom. The rate is temperature dependent, with k(0), estimated from the bimolecular quenching rate constant ((P)k(q)) of Trp analogues in liquids, increasing by about 10-fold from 120 to 293 K. Solvent effects on the quenching efficiency are tested with Trp analogues in water, propylene glycol, and dioxane. The quenching efficiency per collisional encounter is about 0.20 for water, 0.35 for propylene glycol, and drops to 0.025 in the aprotic, least polar dioxane. Acrylamide quenching rate constants are determined for a series of proteins and for experimental conditions appositely selected to test the importance of factors such as the degree of Trp burial and structural rigidity. Relative to (P)k(q) = 1.5 x 10(9) M-1 s(-1) for Trp in the solvent, the magnitude of (P)k(q) for protected Trp; residues in proteins ranges from a maximum s of 6 x 10(4) M-1 s(-1), for the most superficial W59 of RNase T-1, to 10(-1) M-1 s(-1) for the most internal W109 of alkaline phosphatase. For most proteins, theoretical estimates of (P)k(q) based on the distance dependence of the rate exclude any quenching contribution from through-space : interactions by acrylamide in the solvent. This finding, together with a clear correlation between (P)k(q) and other indicators of molecular flexibility, implies that in the millisecond-second time scale of phosphorescence acrylamide can migrate through the macromolecule and that its rate is a measure of the frequency and amplitude of the structural fluctuations underlying diffusional jumps. The origin of the discrepancy between fluorescence and phosphorescence quenching rates in proteins is discussed, and an alternative interpretation of fluorescence quenching data is provided.
Keywords:ROOM-TEMPERATURE PHOSPHORESCENCE, TRYPTOPHAN PHOSPHORESCENCE;ALCOHOL-DEHYDROGENASE, ELECTRON-TRANSFER, FLUORESCENCE;DEPENDENCE, DYNAMICS, INDOLE, OXYGEN, MODEL