Fault diagnosis and fault tolerant (FT) control of electric drive systems have been extensively studied by many researchers. Naturally, one would like to use fault diagnosis information to improve FT control to achieve good post-fault performance while it is safe to do so. In this paper, a novel FT control method is proposed for permanent magnet synchronous motor with inter-turn short circuit fault. Given fault severity, the proposed FT control can reduce torque ripple while keeping reasonable torque output. The theoretical derivation, simulation, and experimental validation are presented in this paper.