화학공학소재연구정보센터
Journal of Physical Chemistry A, Vol.124, No.29, 6076-6083, 2020
Deprotonation of Guanine Radical Cation G(center dot+) Mediated by the Protonated Water Cluster
Proton transfer is regarded as a fundamental process in chemical reactions of DNA molecules and continues to be an active research theme due to the connection with charge transport and oxidation damage of DNA. For the guanine radical cation (G(center dot+)) derived from one-electron oxidation, experiments suggest a facile proton transfer within the G(center dot+):C base pair, and a rapid deprotonation from N1 in free base or single-strand DNA. To address the deprotonation mechanism, we perform a thorough investigation on deprotonation of G(center dot+) in free G base by combining density functional theory (DFT) and laser flash photolysis spectroscopy. Experimentally, kinetics of deprotonation is monitored at temperatures varying from 280 to 298 K, from which the activation energy of 15.1 +/- 1.5 kJ/mol is determined for the first time. Theoretically, four solvation models incorporating explicit waters and the polarized continuum model (PGM), i.e., 3H(2)O-PGM, 4H(2)O-PGM, 5H(2)O-PCM, and 7H(2)O-PCM models are used to calculate deprotonation potential energy profile, and the barriers of 5.5, 13-4, 14.4, and 13.7 kJ/mol are obtained, respectively. It is shown that at least four explicit waters are required for properly simulating the deprotonation reaction, where the participation of protonated water cluster plays key roles in facilitating the proton release from G(center dot+).