Gels are giant single molecules that consist of a very large number (similar to Avogadro's number) of cross-linked nanometer-size polymer chains. Unlike most low-molecular-weight compounds, the extensively cross-linked gel networks typically do not exhibit a well-defined structure. In a previous study, we disproved this preconception and demonstrated that by applying suitable percolation conditions during the gelation process, a highly homogeneous gel with an ordered structure can be synthesized. In the present study, we further demonstrate that by tuning the percolation conditions, stable polymer-rich or polymer-poor nanodefects can be selectively introduced in the gel network; the controlled addition of such nanodefects has not been achieved before. The successful introduction of nanodefects was confirmed using laser speckle tests, and their structures and dynamics were evaluated in Fourier space using static and dynamic scattering measurements. While the addition of polymer-rich defects had a relatively little effect on the elastic modulus of gels, the addition of pores significantly lowered the elastic modulus, suggesting that substantial topological defects were introduced simultaneously when the packing ratio was low. The controlled addition of such nanodefects may potentially modulate the structural, mechanical, optical, and mass transportation properties of the gels effectively, and thus serve as a new design strategy for gel materials.