Science, Vol.266, No.5186, 763-770, 1994
Crystal-Structure of Laci Member, Purr, Bound to DNA - Minor-Groove Binding by Alpha-Helices
The three-dimensional structure of a ternary complex of the purine repressor, PurR, bound to both its corepressor, hypoxanthine, and the 16-base pair purF operator site has been solved at 2.7 Angstrom resolution by x-ray crystallography. The bipartite Structure of PurR consists of an amino-terminal DNA-binding domain and a larger carboxyl-terminal corepressor binding and dimerization domain that is similar to that of the bacterial periplasmic binding proteins. The DNA-binding domain contains alpha helix-turn-helix motif that makes base-specific contacts in the major groove of the DNA. Base contacts are also made by residues of symmetry-related a helices, the "hinge" helices, which bind deeply in the minor groove, Critical to hinge helix-minor groove binding is the intercalation of the side chains of Leu(54) and its symmetry-related mate, Leu(54’), into the central CpG-base pair step. These residues thereby act as "leucine levers" to pry open the minor groove and kink the purF operator by 45 degrees.
Keywords:NUCLEAR-MAGNETIC-RESONANCE;ESCHERICHIA-COLI;REPRESSOR PROTEIN;NUCLEOTIDE-SEQUENCE;REGULATORY PROTEINS;MOLECULAR-DYNAMICS;PURINE REPRESSOR;ACID INTERACTION;OPERATOR;GENE