Polar order in the phosphonium liquid crystal thin films, which are composed of two-dimensional ion-pair-based domains separated by the insulating hydrocarbon layers, was probed by second harmonic generation (SHG) analysis. Despite the ordinary amphiphilic self-assemblies containing no pi -electron moieties, the solid-state thin films retaining a smectic layer structure showed clearly an SHG activity, while the disordered films without the layer structure were not active at all for the SHG. It was found that the multilayer structure plays a crucial role for the SHG from the phosphonium thin films and the ionic layers act as an SHG-active site. The most significant characteristic of this system is to possess an ability to control SHG intensity electrically. The efficiency of the SHG process in the thin-film assemblies was enhanced by applying an external electric field parallel to the layer plane. Furthermore, through evaluation of thermal stability of the sample films, it was revealed that the SHG signals were detected only in the solid-state temperature range and the disappearance of the SHG occurs earlier than the solid-to-liquid crystalline phase transition. These results demonstrated that the origin of polar order in the phosphonium thin films is due to in-plane noncentrosymmetric arrangement (ferroelectric ordering) of ion pairs as an electric dipole, that is, dipole symmetry in an ionic layer.