We synthesized the isomeric polyinlides, 6FDA-m-DDS and 6FDA-p-DDS, and investigated the gas selectivity of the asymmetric polyimide membranes with an oriented surface skin layer. Particularly, we focused on the effect of the chemical structure of the polyimide on the molecular orientation. The asymmetric membranes with the oriented skin layer were prepared by a dry-wet phase inversion process at different shear stresses. The gas permeances of the asymmetric polyimide membranes were measured using a high vacuum apparatus with a Baratron absolute pressure gauge at 76 cmHg. The molecular orientation in the asymmetric polyimide membranes was measured using polarized ATR-FrIR spectroscopy. The gas selectivity of the asymmetric 6FDA-m-DDS membrane increased with an increased in the shear stress and were greater than that of the dense membrane. In contrast, the gas selectivities of the asymmetric 6FDA-p-DDS membrane did not depend on the shear stress and were similar to those of the dense membrane. We clarified that a parallel oriented surface formed on the asymmetric 6FDA-m-DDS membrane caused the enhanced gas selectivity of the membrane.