The structures of Nafion membranes prepared by solutions casting from low aliphatic alcohols/water mixture solvents and N,N'-dimethyl formamide (DMF) solvent were investigated using differential scanning calorimeter and small angle X-ray scattering. The aggregation behavior of Nafion molecules in the casting solutions was also investigated using dynamic light scattering. We show that the morphology of membranes was strongly influenced by the conformations of Nafion molecules in the solutions. In aliphatic alcohol/water mixture solvents, which have a worse compatibility with Nafion backbones, the Nafion molecules aggregate and form fringed rod-like structures. These primary rod-like structures then aggregate again through fringed side chains to form secondary ionic aggregations. In DMF solvent, owing to its better compatibility with Nafion backbones, less Nafion molecules aggregate. The high degree of Nafion molecular aggregations in aliphatic alcohol/water mixture solvents leads to a high degree of hydrophobic and hydrophilic phase separation for membranes prepared by casting from Nafion/aliphatic alcohol/water solutions. However, the lower degree of molecular aggregations in DMF solvent results in a lower degree of hydrophobic and hydrophilic phase separation for membranes prepared by casting from Nafion/DMF solution. (c) 2005 Wiley Periodicals, Inc.