Since there are not enough fault data in historical data sets, it is very difficult to diagnose faults for batch processes. In addition, a complete batch trajectory can be obtained till the end of its operation. In order to overcome the need for estimated or filled up future unmeasured values in the online fault diagnosis, sufficiently utilize the finite information of faults, and enhance the diagnostic performance, an improved multi-model Fisher discriminant analysis is represented. The trait of the proposed method is that the training data sets are made of the current measured information and the past major discriminant information, and not only the current information or the whole batch data. An industrial typical multi-stage streptomycin fermentation process is used to test the performance of fault diagnosis of the proposed method.