A simple microfabrication technique for the preparation of a tapered microchannel for thermally generated pH gradient isoelectric focusing (IEF) has been demonstrated. The tapered channel was cut into a plastic sheet (thickness was 120 pm), and the channel was closed by sandwiching the plastic sheet between two glass microscope slides. The length of the microchannel was 5 cm. The width of the separation channel was 0.4 mm at the narrow end and 4 mm at the wide end. The channel was coated with polyacrylamide to prevent electroosmotic flow (EOF) during focusing. Two electrolyte vials were mounted on top of each end of the channel with the wide end of the channel connected to the cathodic vial and the narrow to the anodic vial. The feasibility of the thermally generated pH gradient in a tapered channel was demonstrated. Important parameters that determined the feasibility of using a thermally generated pH gradient in a tapered channel were analyzed. Parameters to be optimized were control of EOF and hydrodynamic flow, selection of power supply mode and prevention of local overheating and air bubble formation. Tris-HCl buffer, which has a high pK(a) dependence with temperature, was used both to dissolve proteins and as the electrolyte. The thermally generated pH gradient separation of proteins was tested by focusing dog, cat and human hemoglobins with a whole column detection capillary IEF (CIEF) system.