The effect of template phase on the structures of as-synthesized silica nanoparticles with fragile DDAB vesicles as templates is reported. It is found that the template phase plays a critical role in the growth process of silica: the unstable DDAB vesicles in liquid-crystalline phase often lead to the formation of mesostructured solid spheres, and the rather stable DDAB vesicles in gel phase lead to the formation of hollow spheres with less mesostructures.