The equilibrium structures, harmonic vibrational frequencies of methyl peroxynitrate, and structures of protonated methyl peroxynitrate have been investigated using ab initio methods. The methods include the single- and double-excitation quadratic configuration (QCISD) methods and the QCISD(T) method, which incorporates a perturbational estimate of the effects of corrected triple excitation. The lowest-energy gas-phase form of protonated methyl peroxynitrate is a complex between CH3OOH and NO2+. The CH3OOH center dot NO2+ complex is bound by 22 +/-2 kcal/mol. The estimated proton affinity of methyl peroxynitrate is 178.8 +/- 3 kcal/mol. A general trend for the proton affinity of ROO-NO2 (peroxynitrates) compounds is discussed.