Thin layers and multilayer structures of the DNA bases guanine and cytosine on ZnO substrates were prepared by organic molecular beam deposition under ultra-high vacuum conditions and measured in situ by means of vacuum ultraviolet spectroscopic ellipsometry at the synchrotron source BESSY. Using the dielectric function of the individual layers the optical response of the G/C and C/G heterostructures was modeled. Deviations between simulated and experimental data were mainly attributed to the ordering of cytosine over guanine in the G/C and C/G structures and to the influence of the substrate. (c) 2008 Elsevier B. V. All rights reserved.