The influence of various basis sets used in HF and DFT/B3LYP calculations to the Values of atoms in molecules (AIM) parameters derived from the electron density distribution for weak hydrogen-bonded systems is investigated. Using three model complexes, F3CH center dot center dot center dot NH3, F3CH center dot center dot center dot NCH, and FCCH center dot center dot center dot NH3, we show that values of the most important AIM parameters calculated in the bond critical point of the H center dot center dot center dot N hydrogen bond are almost independent of both the method and the basis set. Only the smallest Dunning-type cc-pVDZ or aug-cc-pVDZ basis sets may lead to poor results, whereas even medium-sized Pople-type basis sets can give reasonable results converting to those obtained from the use of large Dunning-type basis sets.