A combination of fluorescence spectroscopy, thermogravimetric analysis, and molecular mechanics calculations has been used to study the structure-directing effect of the aromatic benzylpyrrolidine (BP) molecule (and its monofluorinated derivatives), and (S)-(-)-N-benzylpyrrolidine-2-methanol (BPM) in the synthesis of the microporous AFI structure. The results clearly show that, while all molecules form supramolecular aggregates in concentrated water solution, BPM molecules have a much more pronounced trend to aggregate as dimers within the AFI structure due to the development of interdimer H-bond interactions. Instead, BP (and its ortho- and meta-fluorinated derivatives) SDAs tend to incorporate in the AFI structure as monomers but with the Simultaneous occlusion of water molecules, while para-fluorinated BP derivatives do not form compact dimers able to be accommodated in the AFI structure. We propose a crystallization mechanism where the presence of dimers is required for the nucleation step to occur, while crystal growth takes place through the Simultaneous occlusion of SDA monomers and water (when the synthesis is performed with BP and derivatives) or through the occlusion of SDA dimers (in the synthesis with BPM).