The effect of processing conditions on the morphology of heterophasic PP-EP/EVA/organoclay ternary nanocomposites was examined. The nanocomposites were prepared in a co-rotating twin screw extruder with different screw configurations and incorporation methods. Three different sizes of EVA granules were used. The results obtained by X-ray scattering (WAXD) and electronic microscopy (TEM) showed an increase in d spacing value of the clay associated with the polar interactions between the vinyl acetate of EVA and the surface of the nanoclays. In addition, some chains of the non-polar copolymer PP-EP may have become intercalated into the clay galleries as a result of polymer diffusion induced by shear stress during melt mixing. An increase in surface area of EVA granules resulted in a more homogenous clay dispersion and intercalation. The morphologic changes resulted in an increase in heat distortion temperature (HDT) and flexural modulus of the ternary nanocomposites.