Even the superconducting magnetic energy storage (SMES) is the smart stabilizing device in electric power systems, the installation cost of SMES is very high. Especially, the superconducting magnetic coil size which is the critical part of SMES, must be well designed. On the contrary, various system operating conditions result in system uncertainties. The power controller of SMES designed without taking such uncertainties into account, may fail to stabilize the system. By considering both coil size and system uncertainties, this paper copes with the optimization of robust SMES controller. No need of exact mathematic equations, the normalized coprime factorization is applied to model system uncertainties. Based on the normalized integral square error index of inter-area rotor angle difference and specified structured H, loop shaping optimization, the robust SMES controller with the smallest coil size, can be achieved by the genetic algorithm. The robustness of the proposed SMES with the smallest coil size can be confirmed by simulation study. (C) 2010 Elsevier Ltd. All rights reserved.