This article explores the potential of Moire deflectometry for measuring the temperature field in quasi-two-dimensional small scale flows. The research shows that digital Moire deflectometry combined with two-dimensional Fourier transform for phase map extraction constitutes a useful diagnostic tool for acquiring the fluid temperature with sufficient sensibility and spatial resolution in small two-dimensional or axisymmetric arrangements with negligible pressure variations. The results obtained in the thermal boundary layer of a flat plate are in good agreement with both thermocouple measurements and numerical results.