Journal of Applied Microbiology, Vol.112, No.1, 185-196, 2012
Classification of Salmonella enterica serotypes from Australian poultry using repetitive sequence-based PCR
Aims: To evaluate a semi-automated repetitive extragenic palindromic sequence-based PCR (rep-PCR) system for the classification of Salmonella serotypes from Australian poultry. Methods and Results: Using a DNA fingerprint library within the DiversiLab (R) System, four separate databases were constructed (serogroup B, C, E and Other). These databases contained 483 serologically confirmed (reference laboratory) Salmonella isolates. A blinded set of Salmonella cultures (n = 155) were typed by rep-PCR, matched against the internal library and compared with traditional serotyping. The predicted (Kullback-Leibler) serotype of 143 (92.3%) isolates matched traditional typing (P < 0 05). Of the 12 (7.7%) remaining isolates, ten (6.5%) resulted in 'No Match', one (0.65%) was incorrectly matched to the library (Salm. subsp 1 ser 4,12:-:-), and the other (0.65%) was referenced as Salm. ser. Sofia, whereas rep-PCR and in-house serotyping concurred as Salmonella serovar Typhimurium. Financial analysis showed higher material cost (215%) and a lower labour component (47.5%) for rep-PCR compared with serotyping. Conclusion: The DiversiLab (R) System, with serogroup databases, was successfully implemented as an adjunct for reference serotyping of Salmonella enterica. Significance and Impact of the Study: The DiversiLab (R) System platform is a cost-effective and easy-to-use system, which can putatively determine Salmonella enterica serotypes within a few hours.
Keywords:Australia;DiversiLab (R) System;molecular epidemiology;poultry;rep-PCR;Salmonella;serotyping