The structure of emeraldine salt and emeraldine bases with different molar weight and their behavior in electrochemical doping was studied by different spectroscopic and spectroelectrochemical techniques. By Fourier transform infrared (FTIR) spectroscopy, the branching of the polymer chain at tri- and tetrasubstituted benzene rings as well as the presence of small amounts of phenazine units are shown. The branching of the polymer chains increases with the increasing of the molar weight of emeraldines. The optical transitions in protonated and unprotonated emeraldine were studied by ultraviolet-visible near-infrared (UV-vis NIR) spectroscopy. By comparison of the electron spin resonance (ESR) spectra of emeraldine in protic solvents and acidic solutions, the emeraldine bases are shown to be to some extent protonated. Applying in situ ESR-UV-vis NIR spectroelectrochemistry, the charged states in emeraldines upon p-doping were investigated considering the influence of the nonideal "linear" polymer structures. The initial stage of oxidation, of the emeraldine base and salt consists of the different charged states. The phenazine units in the polymer chains stabilize the charged states in the emeraldines upon p-doping.