The dynamics of photosensitized singlet oxygen generation in a DNA microenvironment were examined using the DNA-binding photosensitizers berberine and palmatine. These photosensitizers generate singlet oxygen only under interaction with DNA because the singlet excited state deactivates rapidly in a nonbinding environment. A kinetic study demonstrated the reaction process whereby singlet oxygen is generated through energy transfer from the triplet excited state of DNA-binding berberine (or palmatine) to molecular oxygen. The guanine-containing sequence of DNA slightly deactivated the singlet excited state of the photosensitizers, resulting in a decrease of the singlet oxygen yield. By the steric hindrance of the DNA strand, the rate constant of the singlet oxygen generation became smaller than that of the other water-soluble photosensitizer.