A facile strategy for preparing vertically aligned polypyrrole (PPy) nanoarrays with precisely controlled density and quantity is presented. The method involves two steps: (1) the fabrication of the patterned substrate via electron beam lithography and (2) the controlled growth of PPy nanowires via electrochemical polymerization on the patterned substrate. The electrical property of a single PPy nanowire is investigated via in situ conducting probe atomic force microscopy.